miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|45292687|gb|CK863030.1|CK863030 CAAATATCTTTGTTTCTCTCTCTGTTTTCTTCTCTCTCCTCTAGGGTTTCTCTTTTTTTCCTCAAATTCATCCTTTTTCA
GAGAAAAAAACATTGCCTTTTTCATCCATTTGAAGCATATATTGTTCTCAGCTTAAAGAAGCTTTCACAATCATGGTCTT
CTGGATTTTCGGCTATGGCTCCTTGGTATGGAATCCAGGTTTTGAATATGATGAGAAAATGATTGGTTACATCAAGGATT
ACAAGCGTGTGTTTGATCTTGCTTGCATTGATCATAGAGGTACACCAGAACACCCTGCAAGAACCTGCACATTGGAAGAA
AGCGAAGGAGCTATTTGCTGGGGTGCTGTTTATTGTGTGCGAGGAGGACCTGAAAAGGAAAAGAAGGCAATGGAGTATCT
TGAAAGAAGAGAGTGTGAGTATGACAGCAAGACCTTAGTAGACTTCTACACGGATGAAGACTCTGCTCAGCCAGCTTTAA
CAGGAGTAATAGTGTTTACATCCACTCCTGACAAAGTGAATAATAAGTACTATCTAGGGCCTGCCCCGTTGGAAGAGATG
GNCTGGCAAATTGCGACTGCTCATGGTCCCTGTGGAAACAACAGAGATACATATTCAACAATGCGAGAAAGGCTCTAATA
CGGATATTGATCCATGGAACGATGATTTACCTTCATAGAAGGTTGCCAAATGAACGTTCCGGAAAGGTTCCTTGAAAATC
GTAAGGTGCTGGGATCCAGCACGGAGAAGAGGTTAACTTGGTTCTTCACACCCATTCCCCATTCAAAAACCAAAAT




Most similar to sp|Q641Z5|CHAC2_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8GZA8|ULT1_ARATH Protein ULTRAPETALA 1 OS=Arabidopsis thaliana
           GN=ULT1 PE=1 SV=1
          Length = 237

 Score =  191 bits (485), Expect(2) = 2e-54
 Identities = 91/147 (61%), Positives = 105/147 (71%)
 Frame = +2

Query: 266 NGVEKESVLMMFSDEELREIIGVKRGGDYIEVTCGCTSHRYGDTVGRLMVYSNGDLEITC 445
           N  E +   M+F  EEL+E+ GV  GGDY+EV CGCTSHRYGD V RL V+  GDLEITC
Sbjct: 4   NEGEMQCGSMLFKQEELQEMSGVNVGGDYVEVMCGCTSHRYGDAVARLRVFPTGDLEITC 63

Query: 446 ECTPGCNEDKMTPGASEKHSGR*TSIQWKNNVWVIANGEKVPLSKTVSLMYYNQASQXXX 625
           ECTPGC+EDK+TP A EKHSGR T+ +WKNNVWVI  GEKVPLSKTV L YYN++S+   
Sbjct: 64  ECTPGCDEDKLTPAAFEKHSGRETARKWKNNVWVIIGGEKVPLSKTVLLKYYNESSKKCS 123

Query: 626 XXXXXXXXXVCLRDKFVRCARCNKERR 706
                    VC RD+FV C  C KERR
Sbjct: 124 RSNRSQGAKVCHRDEFVGCNDCGKERR 150



 Score = 42.7 bits (99), Expect(2) = 2e-54
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +1

Query: 709 RLRTRKECLIHHYALPDKNWKWSDLAYDQ 795
           RLR+R EC +HH A+ D NWK SD  YD+
Sbjct: 152 RLRSRDECRLHHNAMGDPNWKCSDFPYDK 180


>sp|Q8S8I2|ULT2_ARATH Protein ULTRAPETALA 2 OS=Arabidopsis thaliana
           GN=ULT2 PE=2 SV=1
          Length = 228

 Score =  168 bits (425), Expect(2) = 5e-46
 Identities = 81/137 (59%), Positives = 97/137 (70%)
 Frame = +2

Query: 296 MFSDEELREIIGVKRGGDYIEVTCGCTSHRYGDTVGRLMVYSNGDLEITCECTPGCNEDK 475
           +FS EEL+EI GV  G DY+EV CGCTSHRYGD V RL ++S+G+L+ITC+CTP C EDK
Sbjct: 10  LFSKEELQEISGVHVGDDYVEVMCGCTSHRYGDAVARLKIFSDGELQITCQCTPACLEDK 69

Query: 476 MTPGASEKHSGR*TSIQWKNNVWVIANGEKVPLSKTVSLMYYNQASQXXXXXXXXXXXXV 655
           +TP A EKHS R TS  W+NNVWV   G+KVPLSKTV L YYN+A +            V
Sbjct: 70  LTPAAFEKHSERETSRNWRNNVWVFIEGDKVPLSKTVLLRYYNKALK------NSNVSKV 123

Query: 656 CLRDKFVRCARCNKERR 706
             RD+FV C+ C KERR
Sbjct: 124 IHRDEFVGCSTCGKERR 140



 Score = 38.1 bits (87), Expect(2) = 5e-46
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 709 RLRTRKECLIHHYALPDKNWKWSDLAYDQ 795
           RLR+R EC +HH A+ + NWK  D  YD+
Sbjct: 142 RLRSRGECRMHHDAIAEPNWKCCDYPYDK 170


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q641Z5|CHAC2_RAT Cation transport regulator-like protein 2
          Length = 178

 Score =  114 bits (286), Expect = 6e-25
 Identities = 63/149 (42%), Positives = 81/149 (54%)
 Frame = +3

Query: 162 WIFGYGSLVWNPGFEYDEKMIGYIKDYKRVFDLACIDHRGTPEHPARTCTLEESEGAICW 341
           W+FGYGSL+W   F Y +K++GYI +Y R F     DHRG P  P R  TL E  G   W
Sbjct: 2   WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVW 61

Query: 342 GAVYCVRGGPEKEKKAMEYLERRECEYDSKTLVDFYTDEDSAQPALTGVIVFTSTPDKVN 521
           G  Y +  G E+E K   YL+ RE      T V FY  + + +P    V+++  T D  N
Sbjct: 62  GVAYKLPVGKEEEVKT--YLDFREKGGYRTTTVIFYPKDSTTKP--FSVLLYIGTCDNPN 117

Query: 522 NKYYLGPAPLEEMXWQIATAHGPCGNNRD 608
              YLGPAPLE++  QI  A GP G N +
Sbjct: 118 ---YLGPAPLEDIAEQIFNAAGPSGRNTE 143